Chapter 3 Agenda

Zoom link: https://us06web.zoom.us/j/86345886351

Sessions are from 9-12 and 1-4 mountain time (M-F). Please let us know ( or during the workshop) if you have to miss part of a day.

Zoom recordings: https://docs.google.com/document/d/1si7nKMT55C9x-XS8fnF3plFrAX-1uS834lVYEq1_QRM/edit?usp=sharing

Please do not share the zoom recordings (see the Wrap Up chapter for more information).

Monday

MORNING

Introductions
Linux (Adam)

AFTERNOON

Linux (cont) (Adam)

Tuesday

MORNING

Introduction to Pangenomics (Alan)

AFTERNOON

Visualization (BANDAGE) and BLASTing graphs (Joann)

Wednesday

MORNING

VG Toolkit (Alan)

Draft Human Pangenome Reference (Joann)

AFTERNOON

Building graphs with Minigraph (Joann)

Thursday

MORNING

Building graphs with Minigraph-Cactus (Alan)

AFTERNOON

Building graphs with pggb (Joann)

Friday

MORNING

The Cloud (Alan)

AFTERNOON

Review and Questions (Alan and Joann)

Survey and Wrap-up (Adam)

Green text indicates hands-on sessions. Blue text indicates presentations. Please note that the timing might shift slightly.